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orienting potential versus molecular difframe

Posted: Fri Nov 26, 2021 12:22 am
by Ntasha

Hello,
Can the orienting potential and molecular difframe be used interchangeably in lipid bilayers or other systems that constrain the angle of a probe movement? If not, what is the difference? If yes, what is the advantage of using one versus the other?
Thanks


Re: orienting potential versus molecular difframe

Posted: Fri Jan 14, 2022 12:07 pm
by Stefan Stoll

These are fundamentally different models. If you specify an orienting potential, then you are restricting the motional range of the probe. On the other hand, rotating the molecular diffusion frame just changes the principal rotational diffusion directions of the probe, without restricting the motion at all.

If you are in a lipid bilayer and the motion is restricted, I think it's best to use a (simple) orienting potential.