Building up A matrix of exchange coupled system
Posted: Tue Nov 06, 2018 2:41 pm
Hi All,
I don't have a lot of experience on a exchange coupled system or more complicated spin system, so I might have a lot of basic questions on that.
I have questions for building up hyperfine matrix for an exchange coupled system since I didn't see a lot of discussion and case study here.
I have made a stable biradical compound that likely possess strong exchange coupling at ground state with isotropic EPR spectrum collected. I am having trouble simulating it for building up proper hyperfine matrix.
It is a hetero biradical, one's hyperfine comes from a proton, the other unpaired spin is shared by 4 nitrogens which can be grouped into 2 sets of equivalent nitrogen (verdazyl radical). Each set of N gives one hyperfine constant. So this is a 2 electron, 5 nuclei system.
Below is the system I built with exchange coupling without A matrix yet:
Sys.g=[2.0039,2.0041]
Sys.lw=0.15
Sys.S=[0.5 0.5]
Sys.Nucs='N,N,N,N'
Sys.J=-7790000
I am starting with a simple case that I only focus on the dominant hyperfine come from 4 N. The system is then a 2 electron, 4 nuclei system. What confused me is the discussion of spin system in the manual.
Let's say the two sets of N give hyperfine constant 15 and 20, respectively. According to the manual, for a 2 electron 2 nuclei system, the hyperfine matrix is like [10 10 -20 30 40 50; 1 1 -2 3 4 5].
So my first question is, for each block, does 3 of the number stands for hyperfine for each spin? For example, for '10 10 -20', is that the hyperfine for the first electron on first nucleus?
The second question, if it's right, then for an isotropic spectrum, the 3 number should be identical?
The third question is about my own system. With 4 Nitrogen in two sets, and 2 electrons, below is the building for an isotropic A matrix if I ignore the hyperfine interaction between nuclei and another spin:
[15 15 15 0 0 0;15 15 15 0 0 0; 20 20 20 0 0 0; 20 20 20 0 0 0]
Is that right?
If I do not ignore that, my matrix will be like:
[15 15 15 x x x; 15 15 15 x x x; 20 20 20 y y y; 20 20 20 y y y]
Is that right?
Or, since it is isotropic, can I downsize the matrix to:
[15 x;15 x;20 y;20 y] ?
The last question is, if my previous guess is right, is easyspin capable of specifying the nucleus? For example, I want the first 3 number to be those on the first nucleus, and the other 3 is for the other nucleus, since I'm working on a hetero biradical? I'm not sure if the first 3 number and the latter 3 can exchange position without problem?
My full spin system is actually beyond the simple model I built here, I also have two protons on the verdazyl radical part, and one from another radical. If I want to have a very good simulation then it will cost more computing effort, hence I need to minimize any mistake in simulation so I can take a chance understanding this issue.
I appreciate your suggestion on this, thank you!
Best,
Ju
I don't have a lot of experience on a exchange coupled system or more complicated spin system, so I might have a lot of basic questions on that.
I have questions for building up hyperfine matrix for an exchange coupled system since I didn't see a lot of discussion and case study here.
I have made a stable biradical compound that likely possess strong exchange coupling at ground state with isotropic EPR spectrum collected. I am having trouble simulating it for building up proper hyperfine matrix.
It is a hetero biradical, one's hyperfine comes from a proton, the other unpaired spin is shared by 4 nitrogens which can be grouped into 2 sets of equivalent nitrogen (verdazyl radical). Each set of N gives one hyperfine constant. So this is a 2 electron, 5 nuclei system.
Below is the system I built with exchange coupling without A matrix yet:
Sys.g=[2.0039,2.0041]
Sys.lw=0.15
Sys.S=[0.5 0.5]
Sys.Nucs='N,N,N,N'
Sys.J=-7790000
I am starting with a simple case that I only focus on the dominant hyperfine come from 4 N. The system is then a 2 electron, 4 nuclei system. What confused me is the discussion of spin system in the manual.
Let's say the two sets of N give hyperfine constant 15 and 20, respectively. According to the manual, for a 2 electron 2 nuclei system, the hyperfine matrix is like [10 10 -20 30 40 50; 1 1 -2 3 4 5].
So my first question is, for each block, does 3 of the number stands for hyperfine for each spin? For example, for '10 10 -20', is that the hyperfine for the first electron on first nucleus?
The second question, if it's right, then for an isotropic spectrum, the 3 number should be identical?
The third question is about my own system. With 4 Nitrogen in two sets, and 2 electrons, below is the building for an isotropic A matrix if I ignore the hyperfine interaction between nuclei and another spin:
[15 15 15 0 0 0;15 15 15 0 0 0; 20 20 20 0 0 0; 20 20 20 0 0 0]
Is that right?
If I do not ignore that, my matrix will be like:
[15 15 15 x x x; 15 15 15 x x x; 20 20 20 y y y; 20 20 20 y y y]
Is that right?
Or, since it is isotropic, can I downsize the matrix to:
[15 x;15 x;20 y;20 y] ?
The last question is, if my previous guess is right, is easyspin capable of specifying the nucleus? For example, I want the first 3 number to be those on the first nucleus, and the other 3 is for the other nucleus, since I'm working on a hetero biradical? I'm not sure if the first 3 number and the latter 3 can exchange position without problem?
My full spin system is actually beyond the simple model I built here, I also have two protons on the verdazyl radical part, and one from another radical. If I want to have a very good simulation then it will cost more computing effort, hence I need to minimize any mistake in simulation so I can take a chance understanding this issue.
I appreciate your suggestion on this, thank you!
Best,
Ju