Simulation of Cu4Gd cluster
Posted: Mon Jan 02, 2017 7:20 am
Hello,
Greetings. I am very new to the easy spin software and MATLAB. I am facing some problem in simulation of EPR spectrum of Cu4Gd cluster (Frozen solution 5 K). Two copper(II) ion (both are five coordinated {O4N}) and a Gd(III) are bridged by mu3-hydroxo group and these three metal ions are occupied at the vertices of a triangle. There is an another triangle made by the remaining Cu(II) ion and Gd(III). The two triangles share a common vertice through a Gd(III) ion, thus two triangles are linked.
We have fitted the ChiT(T) data using two J model (Jcu-Gd = 0.9 cm-1 and JCu-cu = -3.9cm-1 in -2J Hamiltonian).
Using this information I am trying to simulate the EPR spectrum. The following are the input file that I have created and the Error message obtained are appended. Please suggest to how to rectify this mistake and how can I approach this problem?
Input:
Sys.S = [7/2, 1/2, 1/2, 1/2, 1/2];
Sys.J = [J12 J13 J14 J15 J23 J45];
Sys.Nucs = 'Cu, 14N';
Sys.A = [50 50 130; 20 20 40];
Sys.g = [2.01 2.01, 2.01; 1.99 1.99 2.3; 1.99 1.99 2.3; 1.99 1.99 2.3; 1.99 1.99 2.3];
Sys.D = [200 50 50 50 50];
J12 = -54000;
J13 = -54000;
J14 = -54000;
J15 = -54000;
J23 = 228000;
J45 = 228000;
Sys.lw = 2;
[B, spc] = eprload('Cu4Gd_5K_solution.DSC');
data = [B(:) spc(:)];
save('cugd_sim', 'data','-ascii');
Vary.lw = 0.3;
Vary.g = [0.01 0.02 0.02];
Exp.mwFreq = 9.379671;
Exp.Range = [700 1400];
esfit('pepper',spc,Sys,Vary,Exp);
Error message:
Error using pepper
Spin system field J has wrong size for the given spins.
Error in pepper
Error in esfit
Error in esfit_simplex
Error in esfit
Error while evaluating UIControl Callback
I am trying to upload the .DSC, .DTA or the excel sheets of the experimental EPR spectrum, but it states the error message "The extension DSC or DTA or xlsx is not allowed".
Greetings. I am very new to the easy spin software and MATLAB. I am facing some problem in simulation of EPR spectrum of Cu4Gd cluster (Frozen solution 5 K). Two copper(II) ion (both are five coordinated {O4N}) and a Gd(III) are bridged by mu3-hydroxo group and these three metal ions are occupied at the vertices of a triangle. There is an another triangle made by the remaining Cu(II) ion and Gd(III). The two triangles share a common vertice through a Gd(III) ion, thus two triangles are linked.
We have fitted the ChiT(T) data using two J model (Jcu-Gd = 0.9 cm-1 and JCu-cu = -3.9cm-1 in -2J Hamiltonian).
Using this information I am trying to simulate the EPR spectrum. The following are the input file that I have created and the Error message obtained are appended. Please suggest to how to rectify this mistake and how can I approach this problem?
Input:
Sys.S = [7/2, 1/2, 1/2, 1/2, 1/2];
Sys.J = [J12 J13 J14 J15 J23 J45];
Sys.Nucs = 'Cu, 14N';
Sys.A = [50 50 130; 20 20 40];
Sys.g = [2.01 2.01, 2.01; 1.99 1.99 2.3; 1.99 1.99 2.3; 1.99 1.99 2.3; 1.99 1.99 2.3];
Sys.D = [200 50 50 50 50];
J12 = -54000;
J13 = -54000;
J14 = -54000;
J15 = -54000;
J23 = 228000;
J45 = 228000;
Sys.lw = 2;
[B, spc] = eprload('Cu4Gd_5K_solution.DSC');
data = [B(:) spc(:)];
save('cugd_sim', 'data','-ascii');
Vary.lw = 0.3;
Vary.g = [0.01 0.02 0.02];
Exp.mwFreq = 9.379671;
Exp.Range = [700 1400];
esfit('pepper',spc,Sys,Vary,Exp);
Error message:
Error using pepper
Spin system field J has wrong size for the given spins.
Error in pepper
Error in esfit
Error in esfit_simplex
Error in esfit
Error while evaluating UIControl Callback
I am trying to upload the .DSC, .DTA or the excel sheets of the experimental EPR spectrum, but it states the error message "The extension DSC or DTA or xlsx is not allowed".