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Assistance Required in Defining Spin for a Metal Radical System in Easyspin
Posted: Wed Apr 10, 2024 11:00 am
by Sunil Kumar
Hi everyone,
I am new to using the EPR simulation tool Easyspin and have recently grasped the basic aspects of simulation using this tool. However, I am encountering a bit of confusion regarding how to define the spin for a complex system.
To elaborate, I am working with a complex that includes a V(II) metal center coordinated to three bidentate ligands. These ligands have radical electrons delocalized over their pi-systems, amounting to three radical electrons in total. Given this setup, I am uncertain about the correct way to define the spin of the entire system.
Any guidance or insights on this matter would be highly appreciated. Thank you in advance for your help!
Best regards,
Sunil Kumar
Re: Assistance Required in Defining Spin for a Metal Radical System in Easyspin
Posted: Fri Apr 12, 2024 2:51 am
by christiansen
If each ligand has one electron delocalised across its pi system, you simply model by a single s=1/2. So one s = 3/2 and three s=1/2 in total.
Re: Assistance Required in Defining Spin for a Metal Radical System in Easyspin
Posted: Mon Apr 15, 2024 3:40 am
by Sunil Kumar
Thank you for your suggestion.
But I am getting some errors. I am not able to figure them out.
The input file is:
Code: Select all
clear,clc,clf
[B,spc] = textread('fe_epr.txt','%f %f');
plot(B,spc)
Sys.g = [2.0791 2.0663 2.0075; 2.0023 2.0023 2.0023]
Sys.S = [2 1/2];
Sys.Nucs = 'Fe,14N, 14N';
Sys.n = [1 1 1];
Sys.J = 1.2;
Sys.lwpp = [0.01, 0.05]; % Lorentzian lines, mT
% Hyperfine couplings
A_anion = unitconvert([2; 0.055; 0.55],'mT->MHz');
% Spectrometer settings
%--------------------------------------------------------------------------
Exp.mwFreq = 9.448; % GHz
Exp.nPoints = length(B);
Exp.Range=[min(B) max(B)]
% Simulations
%--------------------------------------------------------------------------
Sys.A = A_anion;
[B,spca] = pepper(Sys,Exp);
plot(B, spc, B, spca)
SysVary.g = [0.015 0.015 0.015];
SysVary.lwpp = [0.001 0.05];
SysVary.A = [0.055, 0.055, 0.055];
and the error is :
Error using pepper
Size of Sys.A (2x1) is inconsistent with number of nuclei (2) and electrons (2).
Error in compisoloop
Error in pepper
Kindly help me to figure it out.
The complex is having Iron (II) and a radical electron ligand.
Re: Assistance Required in Defining Spin for a Metal Radical System in Easyspin
Posted: Wed Apr 17, 2024 2:30 pm
by christiansen
You system has two spin entities, a s=2 and an s=1/2, but Sys.nucs and Sys.A has three entries. That does not match - only one nucleus can be associated with each spin centre.