Loading MD trajectory with mdload

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kellyj
Newbie
Posts: 1
Joined: Mon Feb 01, 2021 9:58 am

Loading MD trajectory with mdload

Post by kellyj »

Hi,

I want to try out cardamom to simulate an EPR spectrum from an MD simulation.
However when using mdload() I get an error

TrajFile = 'T0EZ.DCD';
TopFile = 'topol.psf';
Info.ResName = 'AS8';
Info.SegName = 'MAIN';
Info.LabelName = 'TOAC';
MD = mdload(TrajFile,TopFile,Info);

Using default atom names for label TOAC.
-- extracting data from MD trajectory files -----------------------------------------
trajectory 1
Iteration 1/1 1.6 it/s estimated time left: 00:00
Calculating label frames...
Unable to perform assignment because the size of the left side is 5002-by-3 and the size of the right side is 5002-by-3-by-0.

Error in mdload

Error in Untitled (line 10)
MD = mdload(TrajFile,TopFile,Info,Opt);

What can I do to fix this?
Thanks!

Stefan Stoll
EasySpin Creator
Posts: 1053
Joined: Mon Jul 21, 2014 10:11 pm
Location: University of Washington

Re: Loading MD trajectory with mdload

Post by Stefan Stoll »

Can you please post the trajectory and topology files somewhere so we can try to recreate this?

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