esfit save the theoretical spectrum generated with the best parameters

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yvesjour
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Posts: 10
Joined: Tue Mar 31, 2015 4:45 am

esfit save the theoretical spectrum generated with the best parameters

Post by yvesjour »

Firstly, I hope that all members of this forum are well and unaffected by this terrible epidemic.

I'm not a Matlab expert and I don't know how to add to my script the instructions to save the theoretical spectrum generated with the best parameters when the fit has converged or if I stop it with the command on the GUI.

The script just behind save the spectrum with the starting values not with the best parameters.

Is it possible to generate the best parameters spectrum without writing another script using pepper with the best parameters.

Thank you for your help

clear

[B,spc]=textread('/Users/yves/ownCloud/Articles.en.cours/Marion.NiCuNi/simu.RPE/RPE.10.2018/NiCuNiopba4K.txt','%f, %f');

Sys.S = [3/2];

light=physconst('LightSpeed')

Sys.g= [2.1335 2.2347 2.0584];
Sys.D=[8.8810e+04 2.7929e+04];
Sys.DFrame=[0.0049 -0.1326 -0.0082];
Sys.HStrain=[1.4732e+03 841 3.3308e+03];


Exp.Range = [0 600];
Exp.Temperatue=[4.];
Exp.mwFreq = 9.34137787;

SimOpt.nKnots = 35;

SimOpt.Method ='matrix';

Vary.D=[500 150];
%Vary.g=[0.01 0.01 0.01];
%Vary.DFrame=[0.01 0.01 0.01];
%Vary.HStrain=[200 200 350];

Sys0 = Sys;
Sys0.D = Sys.D;
%Sys0.g=Sys.g;
%Sys0.DFrame=Sys.DFrame;
%Sys0.HStrain=Sys.HStrain;


FitOpt.Method = 'simplex';

%FitOpt.Scaling = 'maxabs';
FitOpt.Scaling = 'lsq';

esfit('pepper',spc,Sys,Vary,Exp,SimOpt,FitOpt)

[H, I]= pepper(Sys, Exp, SimOpt);

plot(H, I*5000,'r',B,spc,'b');

data = [H(:) I(:)];
save('theo.RPE.opba.3demiseul.simplex.toutparam.txt','data','-ascii');
Stefan Stoll
EasySpin Creator
Posts: 1050
Joined: Mon Jul 21, 2014 10:11 pm
Location: University of Washington

Re: esfit save the theoretical spectrum generated with the best parameters

Post by Stefan Stoll »

Try [BestSys,BestSpc] = esfit(...). See documentation.

In the esfit GUI you can also click on Export to save the currently best-fit spin system to the MATLAB workspace.
yvesjour
User
Posts: 10
Joined: Tue Mar 31, 2015 4:45 am

Re: esfit save the theoretical spectrum generated with the best parameters

Post by yvesjour »

Thank you very much
I will try, just a question. three dots are enough in the esfit(...) parenthesis.
best regards

Yves
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