Search found 134 matches

by Matt Krzyaniak
Thu Oct 20, 2022 9:58 am
Forum: General forum
Topic: J couplings from fluid-solution EPR spectra
Replies: 8
Views: 5221

Re: J couplings from fluid-solution EPR spectra

If you keep the interactions isotropic, pepper works well for simulating radicals in the fast motion regime. If you have some dynamics that push you slightly toward the slow motion regime, where you need Tcorr or the functionality of chili, unfortunately EasySpin can't deal with two spins at the mom...
by Matt Krzyaniak
Wed Oct 12, 2022 9:39 am
Forum: General forum
Topic: Baseline correction of parallel gap of ESR spectra.
Replies: 4
Views: 7521

Re: Baseline correction of parallel gap of ESR spectra.

A very simple way is to fit a higher order polynomial to the baseline where there is no spectra. I typically use something like: indx = field<230 | field>350; [p,S,mu] = polyfit(field(indx),spec(indx),3); bl = polyval(p,field,S,mu); plot(field,spec,field,bl) I will then play around with the limits, ...
by Matt Krzyaniak
Tue Sep 06, 2022 7:32 am
Forum: General forum
Topic: Fitting SQUID data
Replies: 2
Views: 1825

Re: Fitting SQUID data

It looks like you forgot to pass Exp into esfit.

Also, if you are just including isotropic exchange coupling, Sys.ee should only be a single value.

by Matt Krzyaniak
Wed Jul 27, 2022 7:51 am
Forum: General forum
Topic: Organic Biradical and finding the distance between spins
Replies: 2
Views: 3223

Re: Organic Biradical and finding the distance between spins

There are two slightly different forms, which depend on whether the two spin are like or unlike. And what I mean by like or unlike really comes down to there being appreciable exchange coupling or spin correlation, you can find some discussion of this in Slichter (3rd ed. pg 79-80), and it deals wit...
by Matt Krzyaniak
Fri May 27, 2022 7:46 am
Forum: General forum
Topic: How to include J/ee between two systems
Replies: 4
Views: 3487

Re: How to include J/ee between two systems

The only way to include J/ee between two spin is to set them up in the same spin system. So using the syntax Sys.S = [1, 1/2] . It is entirely expected that the simulation will slow down, since you are going from a Hilbert space of 2 and 3 to one with a size of 6(and a lot more if you are including ...
by Matt Krzyaniak
Wed May 04, 2022 9:51 am
Forum: General forum
Topic: Dysonian lines
Replies: 4
Views: 4904

Re: Dysonian lines

While it is not explicitly included, the tools within ES do exist. clear sys.S = 1/2; sys.g = 2; sys.lwpp = [0 1]; Exp.Range = [330 350]; Exp.nPoints = 1024; Exp.mwFreq = 9.517; [x,y] = pepper(sys,Exp); % calculate the dispersion ydisp = hilberttrans(y); %apply the phase shift which results in a wea...
by Matt Krzyaniak
Tue Apr 12, 2022 11:19 am
Forum: General forum
Topic: Simulate High-Field Triplet Spectra as Sum of Zero-Field Transitions?
Replies: 3
Views: 3261

Re: Simulate High-Field Triplet Spectra as Sum of Zero-Field Transitions?

I'm not sure if this is what you're asking for, but it is what I usually default to when thinking about the transitions. clear Sys.S = 1; Sys.g = 2.00; Sys.lwpp = 1; D = 1000; E = 200; Sys.D = [D E]; % population of the zf levels low to high energy Sys.Pop = [1 0 0]; Exp.Harmonic = 0; Exp.mwFreq = 4...
by Matt Krzyaniak
Tue Feb 08, 2022 10:58 am
Forum: General forum
Topic: Difference between resfields and eigfields
Replies: 7
Views: 3846

Re: Difference between resfields and eigfields

OK I went back and looked at things, yes my initial thought was wrong. It actually turns out that this is an interpolation problem, namely your range is just way too large for the number of points. It is easy enough to see in the minimal script that I included, take the max range from 10 3 -> 10 5 a...
by Matt Krzyaniak
Mon Feb 07, 2022 9:12 am
Forum: General forum
Topic: Difference between resfields and eigfields
Replies: 7
Views: 3846

Re: Difference between resfields and eigfields

Here is a pared down script. clear Exp.mwFreq=9.46; %Exp.Temperature=4.2; Exp.CrystalSymmetry='C1'; Exp.Range = [0 1000]; Sys.S=1/2; Sys.g=[8.2819 8.3053 3.3640]; Sys.gFrame=[ 45.03 54.55 -4.47]/180*pi; phi = (0:5:180)*pi/180; Tilt = [ -89.64 45.07 -90.65]/180*pi -pi; for i=1:length(phi) Exp.Crystal...
by Matt Krzyaniak
Fri Jan 14, 2022 10:32 am
Forum: General forum
Topic: Consistency between EasySpin and Bruker AnisoFit?
Replies: 7
Views: 6024

Re: Consistency between EasySpin and Bruker AnisoFit?

If both of these sets of results are from fitting, I'm not surprised if they produce different numbers. Unless both routines are using the same minimization algorithms, initial guesses and processing and target, they are likely to end up in different local minima. The fitting of the EPR spectrum of ...